From bschlesinger@nssdca.gsfc.nasa.gov Fri Jan 27 15:03:12 1995 Path: solitaire.cv.nrao.edu!hearst.acc.Virginia.EDU!portal.gmu.edu!europa.eng.gtefsd.com!news.umbc.edu!haven.umd.edu!ames!newsfeed.gsfc.nasa.gov!nssdca.gsfc.nasa.gov!bschlesinger From: bschlesinger@nssdca.gsfc.nasa.gov (Barry M. Schlesinger) Newsgroups: sci.astro.fits,sci.data.formats Subject: FITS basics and information (periodic posting) - 2/2 Followup-To: poster Date: 27 Jan 1995 11:22 EDT Organization: NASA Goddard Space Flight Center -- Greenbelt, Maryland USA Lines: 358 Distribution: world Expires: 23 Feb 1995 19:00 EST Message-ID: <27JAN199511222988@nssdca.gsfc.nasa.gov> Reply-To: fits@nssdca.gsfc.nasa.gov NNTP-Posting-Host: nssdca.gsfc.nasa.gov Summary: This posting discusses FITS software, on-line information services, and NOST services News-Software: VAX/VMS VNEWS 1.41 Xref: solitaire.cv.nrao.edu sci.astro.fits:1014 sci.data.formats:774 FITS basics and information, Part 2 3 Software and Sample Data 3.1 NOST All NOST software is available from the NOST ftp site (4.1). 3.1.1 FITS Product Conformance Tester with Instructions The FITS Product Conformance Tester is a software package in C being developed by the NOST for validating FITS files. The available prototype validates required keywords in the primary header and, at the user's option, prints selected values from the primary data array. Even after finding an error in a required keyword, it will continue evaluating the file, looking for errors in required keywords. If the syntax errors do not keep the software from making a reasonable guess as to the values of all the required keywords, and the resultant values are valid, it will try to read the primary data array if the user has so specified. Because this software is still under development, it should not be run before reading the separate instructions file. 3.1.2 Header Lister This program prints out all the headers in a FITS file, including the primary header and all extension headers. It does not evaluate them for errors. It is a useful tool for obtaining a quick summary of the contents of a FITS file. 3.1.3 Error Test Files These files consist of several versions of the same FITS file, a valid one and several with different kinds of header errors. They are useful for testing the ability of software designed to read FITS files to cope with files that are not standard FITS or with errors in the file. The file includes only a primary header and data array. Be sure to use binary transfer for ftp access of FITS test files. 3.2 HEASARC The NASA/Goddard High Energy Astrophysics Science Archive Research Center (HEASARC) has developed and maintains FITS software and utilities, including the FITSIO package and FTOOLS utilities. See 4.2 for information on electronic access to FITSIO and supporting documentation. 3.2.1 FITSIO The FITSIO package, maintained by Bill Pence, provides FORTRAN software for easily reading and writing FITS format files. The current version is 3.7. There is a C interface, consisting of a set of C macro definitions, one for each FITSIO subroutine, replacing the C wrapper routines of previous versions. FITSIO runs on most types of machines. It supports all the currently defined standard FITS extensions including IMAGE and BINTABLE and contains world coordinates subroutines for conversion between pixel and celestial coordinates. There is also software support for the checksum proposal discussed in section 2.7. 3.2.2 FTOOLS James Kent Blackburn and Bill Pence document the FTOOLS collection of over 100 utility programs to create, examine, or modify FITS data files. These programs are useful for examining the contents of FITS files and modifying them for input to more involved analysis tasks; they cannot generally be used for detailed data analysis or model fitting. The current version 3.2 was released in November 1994; new versions are released about every 3 months. Users have the option of installing the entire FTOOLS package, which includes many routines specific to high energy astrophysics, or a core set that contains only the routines that perform general operations on FITS files. FTOOLS can be built as a package within IRAF or as a set of stand alone executable tasks. FTOOLS is supported on the following platforms: Unix: ALPHA/OSF, DEC/ULTRIX, SUN/SunOS, SUN/Solaris, MODCOMP/REALIX VMS: ALPHA/VMS, VAX/VMS. Questions or comments should be sent to ftoolshelp@athena.gsfc.nasa.gov 3.2.3 VERIFITS W. Pence (GSFC/HEASARC) has announced the VERIFITS program to verify the conformance of any FITS format data file on magnetic disk to the standard, checking keywords and data. At user option it will list the total number of pixels, number of null pixels and maximum and minimum data values. If it finds an error while evaluating the header, it normally ceases validation and reports the error. The VERIFITS program is a stand alone version of the fverify task that is included in the IRAF or Host FTOOLS package. Both VERIFITS and fverify perform the same verification checks, but fverify has a nicer user interface, as provided by the IRAF or Host environments. Several different binary executable versions of VERIFITS are available, for running on SUN workstations, DECstations, DEC Alphas running OSF/1 or VAX/VMS machines.The VERIFITS source code is also provided and may be easily linked with the FITSIO library to run on the other types of machine on which FITSIO is supported. While VERIFITS has been extensively tested, under some unusual circumstances not covered by the tests it may still fail to detect a FITS format error or may issue an error message that does not accurately describe the problem. 3.3 ADC FITS Tables Browser The Astrophysics Data Center has released the ADC FITS Table Browser, which has been tailored specifically for use with the ADC CD-ROMs but may be used with other FITS ASCII Tables. It reads standard FITS ASCII tables and allows the user to interactively browse through them and selectively display any field or record in a table. File extraction facilities allow the writing of all or part of the input table to disk in FITS or text file format. Copies of the program for MS-DOS and Unix are available by anonymous FTP on nssdc.gsfc.nasa.gov in the directory /pub/ADC/software/ftb. See the file README.FTB for instructions on downloading, installation, and use. 3.4 Converting FITS Files to Image Format Disclaimer: The mention of particular software packages is not necessarily intended as an endorsement of those packages to the exclusion of others. Users should obtain proper licensing for any proprietary package or format mentioned. Information about publicly available nonproprietary packages is welcome, and, if the package appears relevant and useful, will be added to this posting. Information about such packages should include how they can be obtained and whom to contact with questions. It should also describe any limits on the FITS files that the package can handle (e. g., NAXIS must be 2; data array members must be integers). 3.4.1 Major Astronomical Imaging Packages The three major astronomical imaging packages -- the Astronomical Image Processing System (AIPS), the European Southern Observatory Munich Image and Data Analysis System (ESO-MIDAS), and the Image Reduction and Analysis Facility (IRAF) -- provide facilities for displaying images stored in FITS files. These packages are large and probably best installed on major systems. AIPS was developed by the National Radio Astronomy Observatory (NRAO), and IRAF by the National Optical Astronomy Observatories; the origins provide an indication of the best applications. Europeans might find ESO-MIDAS more convenient. 3.4.2 pbm+ The Extended Portable Bitmap Toolkit (pbm+) can be used for converting many FITS files to image format. However, support is not guaranteed for all FITS files where the data are in the form of an image. In particular, there may be problems when the data array members are in IEEE floating point format (BITPIX<0) or the array has more than two dimensions (NAXIS>2). 3.4.3 IMDISP (IBM/PC) Archie Warnock and Ron Baalke have announced release of version 7.9 of the IMDISP program. IMDISP is an interactive image processing program that runs on an IBM PC computer and supports FITS input. IMDISP 7.9 is available via anonymous ftp at explorer.arc.nasa.gov [128.102.32.10] in a file called imdisp79.zip in the pub/SPACE/SOFTWARE subdirectory. and at nssdc.gsfc.nasa.gov in the pub/ADC/software/imdisp subdirectory. It may also be available (at least for the time being) through Simtel-20 [192.88.110.20] 3.4.4 Applications with xv 3.0 For a system that has xv 3.0, some unsupported modifications to apply it to FITS files exist. Adam Bernstein (adam@dragon.jpl.nasa.gov) has made some additional modifications to the original set, to overcome some implementation problems. They are available by ftp to csi.jpl.nasa.gov in the /pub/users/adam directory. They can handle files with any of the valid FITS values of BITPIX, and can handle NAXIS>2 provided NAXISn=1 for n>2 (a convention often used in radio astronomy). The file "convert.tar.Z" contains these changes, as well as a new program called "FITS2GIF" created to allow non-interactive conversion of a large number of FITS files to GIF format. Use of xv 3.0 at a site must be licensed. 3.4.5 ViewFITS (OS/2) Dominique Beauchamp, Universite Laval, Quebec City, has released version 0.4, rel. 1 of ViewFITS, a FITS reader for OS/2 2.1 presentation manager. It is on ftp.cdrom.com in /pub/os2/incoming, file name vf04r1.zip, although it will probably be moved to /pub/os2/2_1/graphics/vf04r1.zip. This program gives the user the opportunity to display FITS images (8,16 or 32 bits, integer or float), modifying the gray shade palette, doing negation and zooming out. 3.4.6 FITS and the Macintosh Thorsten Lemke, at Brunswick in Germany has added FITS support to GraphicConverter for the Macintosh and provided the following information. GraphicConverter 1.7.7 or later can import FITS array files with all five permitted data types (8, 16, 32 bit integer and 32, 64 bit real). Every FITS file will be converted to 8 bit gray scale on opening because this is the maximum number of grays on a Macintosh. GraphicConverter can convert FITS and other files to a lot of different graphic file formats i.e. PICT, TIFF, GIF, PCX, IFF, PPM... GraphicConverter is available via ftp info-mac archives. A mirror site is amug.org 165.247.10.2 pub/ftp1/info-mac 1/1 ALL ftp email Arizona Macintosh Users Group, Phoenix, Arizona, USA GraphicConverter is in the folder grf/util/graphicconverter* The site at NRAO, described in 4.3,contains a collection of Usenet postings and electronic mail messages about the use of FITS on Macintosh hardware, in fits/os-support/mac-os/. 3.4.7 FITSview (Windows) Bill Cotton at NRAO has announced an updated beta release, version 0.4.0, of FITSview, a FITS image viewer for Windows. Celestial positions are determined using world coordinate projections. All defined FITS data types are supported, as are blanked pixels. Two and three dimensional simple FITS images are supported. FITSview runs on Windows 3.1 or later and uses any multicolor (or multiple gray level) display. Extensive on-line documentation is included. It is available by ftp from the NRAO site: ftp://fits.cv.nrao.edu/fits/os-support/ms-windows/fitsview/fitsv040.txt ftp://fits.cv.nrao.edu/fits/os-support/ms-windows/fitsview/fitsview040.zip Installation is described in fitsv040.txt. 3.5 World Coordinates Two ANSI C functions, worldpos() and xypix(), convert (RA, dec) <--> pixel location for 8 common types of projective geometries where "(RA,Dec)" are more generically (long,lat). These functions are based on the World Coordinates implementation of Classic AIPS. The software is in src/wcs/worldpos.tar.gz at the NRAO site (section 4.3) and supporting documentation can be found in documents/wcs/. 4 On-line Information Sources 4.1 NOST The NOST maintains a file of FITS information available by anonymous ftp from nssdca.gsfc.nasa.gov/fits or by DECnet copy from NSSDCA, in the directory FITS. A proposed reorganization could move the FITS material to a FITS subdirectory under a STANDARDS directory. NSSDCA is a VAX, and the files there cannot be accessed using Mosaic. Lynx will work with URL ftp://nssdca.gsfc.nasa.gov/fits. A copy of the NOST files can be reached using Mosaic from ftp://nssdc.gsfc.nasa.gov/pub/fits. Because this site is not a mirror and must be manually revised, updates may lag those at NSSDCA. The FITS files include copies of the current NOST standard, the Definition of FITS, in flat ASCII, PostScript, and LaTeX. Style and index files are provided for the LaTeX form. The only difference among the three formats is that the ASCII form lacks typeface formatting; therefore, only one need be retrieved. The draft revisions to the standard covering the specification of units are provided as a text file. A current list of the extension type (structure) names registered with the IAU FITS Working Group is maintained. Also available, in LaTeX form, is a copy of the proposal for the IMAGE extension, an earlier version of the paper cited in 2.1. The current version of the User's Guide is available in LaTeX, Unix(.Z)-compressed PostScript and uncompressed PostScript, along with a style file for the LaTeX version. A copy of the conventions for physical blocking on various media, as adopted by the IAU FITS Working Group, is available in flat ASCII text form. The directory also contains a modified version of this posting. An AAREADME.DOC file describes the contents of the directory. A SOFTWARE subdirectory contains the FITS Product Conformance Tester prototype, along with instructions. The instructions should be retrieved along with the software. The C software to read and list the headers of a FITS file is also in this subdirectory. Another file provides information on publicly available FITS software packages. The ERRTEST subdirectory contains the error test files described in section 3.1.1. Remember that binary transfer should always be used for FITS files. Both the SOFTWARE and ERRTEST subdirectories include AAAREADME.DOC files describing their content. 4.2 HEASARC The HEASARC FITS software, utilities, and accompanying documentation are available as follows: ftp://legacy.gsfc.nasa.gov/software/fitsio contains the FITSIO package, and supporting documentation. ftp://legacy.gsfc.nasa.gov/software/fitsio/verifits contains the VERIFITS validator and supporting documentation. ftp://legacy.gsfc.nasa.gov/software/ftools/release contains the FTOOLS collection, and supporting documentation. The FTOOLS software is being distributed as compressed tar files. All three directories contain informational README files. 4.3 NRAO A library of FITS material can be found at ftp://fits.cv.nrao.edu/fits, located at NRAO. This machine supports a WAIS server named nrao-fits which has an index of all of the FITS-related text files in the archive; the file nrao-fits.src is have descriptive README files; in addition, the available at think.com and at ftp://fits.cv.nrao.edu/fits/wais-sources/nrao-fits.src. There is a World Wide Web server for the FITS Archive as well, at the URL http://fits.cv.nrao.edu. The documents subdirectory of the fits directory contains a number of subdirectories. The BINTABLE draft for Astronomy and Astrophysics is, in various formats, in files bintable_aa.*. A proposals subdirectory is reserved for detailed proposals currently being considered by the FITS committees. It contains the two announcements of the checksum proposal, and a checksum subdirectory contains the proposal itself and some supporting material. A drafts subdirectory contains drafts of designs not yet submitted, for example, a proposed method for incorporating data compression under FITS. The wcs subdirectory contains a draft of the current proposal for world coordinate system conventions now under community review and earlier documents and presentations on world coordinates. Other subdirectories of the fits directory include sample FITS files -- both actual data files and files specially constructed to test the ability of software to read all kinds of FITS structures, some code for particular environments, pointers to other code, and an archive of Usenet postings related to FITS. 4.4 HEAFITS Exploder An electronic mail listserver called HEAFITS has been set up as a specialized group for discussion of High Energy Astrophysics- specific FITS issues that would not necessarily be of interest to the majority of subscribers to the existing sci.astro.fits newsgroup and fitsbits mailing list. To *subscribe* to the HEAFITS group, send the following one-line e-mail message to listserv@legacy.gsfc.nasa.gov: subscribe heafits Your Name where 'Your Name' is your actual First and Last names. Messages to the actual mailing list are sent to heafits@legacy.gsfc.nasa.gov. 5. Some contributors (non-exhaustive list) A. Bernstein (JPL) D. Beauchamp (U. Laval) W. Cotton (NRAO) T. Lemke (U. of Brunswick) W. Pence (GSFC/HEASARC) D. Wells (NRAO) and the participants in sci.astro.fits and the fitsbits mailing list 6. NOST Services The NOST library can provide printed copies of many of the documents listed above. Printed or electronic copies of the User's Guide and the NOST Standard, for those without ftp access, are available. Because of restrictions set by the copyright holder, NOST can send copies of the four FITS papers only to non-profit organizations. The NOST cannot provide copies of the IEEE floating point standard, which is copyright to IEEE. The NOST can be reached as follows: (Postal) NASA/Science Office of Standards and Technology Code 633.2 Goddard Space Flight Center Greenbelt MD 20771 USA (Internet) nost@nssdca.gsfc.nasa.gov (DECnet) NCF::NOST Telephone: +1-301-286-3575 9:00 a. m. - 6:00 p. m., U. S. Eastern Time (-0500 from the last Sunday in October through the first Saturday in April; -0400 the remainder of the year) If the Librarian is unavailable, a phone mail system takes the call after four rings. Please mention this posting in your request. Use the FITS office electronic mail address below for replies or questions. It is monitored by other NOST staff members when I am away from the office and provides a greater certainty of rapid response. When communicating with the NOST library or FITS Support Office, please provide your name, affiliation, and location. Barry M. Schlesinger Coordinator, NASA/NSSDC NOST FITS Support Office +1-301-441-4205 fits@nssdca.gsfc.nasa.gov NCF::FITS